The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0893
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1597261
End posion on genome 1597334
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ccgcatttat
tRNA gene sequence 
GCAGTTGTGGTATAGTCTGGTTATTACTTGGGCCTTCCAAGCCTACAACCCGGGTTCGAA
TCCCGGCAACTGCAttt
Downstream region at tRNA end position 
gttttatcta
Secondary structure (Cloverleaf model)
>At0893	Gly	TCC
                   t      Attt gttttatcta
                     G - C
                     C - G
                     A - T
                     G - C
                     T - A
                     T - A
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     G
  T         T A T G       C C G G G     C
  G           | | |                 T T
  G         T T A C
    T T A          T     CAAC
                    T - A
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGTTGTGGTATAGTCTGGTTATTACTTGGGCCTTCCAAGCCTACAACCCGGGTTCGAA
TCCCGGCAACTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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