The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0895
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1705326
End posion on genome 1705411
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
caccaacaat
tRNA gene sequence 
GTTGGGGTAGCCTAGCCTGGTAGGGCGTTAGACTGCTAATCTAATGATACACTAGTATCG
CAGGGGTTCAAATCCCTTCCCCAATGttt
Downstream region at tRNA end position 
tttttaaaaa
Secondary structure (Cloverleaf model)
>At0895	Ser	GCT
                   t      Gttt tttttaaaaa
                     G + T
                     T - A
                     T - A
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
      C G A        A      | + | | |     A
    C       T C C G       A G G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGATACACTAGTATCGC
                    T - A
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTTGGGGTAGCCTAGCCTGGTAGGGCGTTAGACTGCTAATCTAATGATACACTAGTATCG
CAGGGGTTCAAATCCCTTCCCCAATG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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