The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0896
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 100802
End posion on genome 100730
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
ttattattat
tRNA gene sequence 
GGGCTGGTAGCTCAGATGGTAGATCGTCGCCTTGGCATGGCGGAGGCCCCGGGTTCAAAT
CCCGGTCAGTCCAttt
Downstream region at tRNA end position 
ataaattttc
Secondary structure (Cloverleaf model)
>At0896	Ala	GGC
                   t      Attt ataaattttc
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     G + T          T A
                    T     G G C C C     A
      A G A        A      | | | | |     A
    T       C T C G       C C G G G     C
    G       | |   |                 T T
    G       G A T C
      T A          G     AGGCC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGGTAGCTCAGATGGTAGATCGTCGCCTTGGCATGGCGGAGGCCCCGGGTTCAAAT
CCCGGTCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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