The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0897
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 257759
End posion on genome 257688
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tattttttgt
tRNA gene sequence 
GGCAAGCTGACCGAGCGGCTTAGGTGCGTGGCTGCAGACCATGATACTGGGGTTCAAATC
CCTAGCTTGCCTtca
Downstream region at tRNA end position 
tttattaatt
Secondary structure (Cloverleaf model)
>At0897	Cys	GCA
                   t      Ttca tttattaatt
                     G - C
                     G - C
                     C - G
                     A - T
                     A - T
                     G - C
                     C - G          T A
                    T     A T C C C     A
      C G A        G      | + | | |     A
    G       G C C A       T G G G G     C
    G         | | |                 T T
    C       A G G T
      T T          G     ATAC
                    C - G
                    G + T
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCAAGCTGACCGAGCGGCTTAGGTGCGTGGCTGCAGACCATGATACTGGGGTTCAAATC
CCTAGCTTGCCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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