The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0898
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 333400
End posion on genome 333327
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
acctttttat
tRNA gene sequence 
GGGCCCGTAGCTCAGACTGGGAGAGCGCTGCCCTTGCAAGGCAGAGGCCCCGGGTTCAAA
TCCCGGTGGGTCCAttt
Downstream region at tRNA end position 
tattagtgca
Secondary structure (Cloverleaf model)
>At0898	Ala	TGC
                   t      Attt tattagtgca
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G + T          T A
                    T     G G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     AGGCC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGACTGGGAGAGCGCTGCCCTTGCAAGGCAGAGGCCCCGGGTTCAAA
TCCCGGTGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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