The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0899
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 554237
End posion on genome 554165
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tctcgatttt
tRNA gene sequence 
GCCTTAGTGGCTCAGCCGGTAGAGCGCCACCTTGGTAAGGTGGAAGTCGGGGGTTCGAAT
CCCCCCTAAGGCTtct
Downstream region at tRNA end position 
ttaaaaacta
Secondary structure (Cloverleaf model)
>At0899	Thr	GGT
                   t      Ttct ttaaaaacta
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     A - T
                     G - C          T A
                    T     C C C C C     A
      C G A        G      | | | | |     G
    C       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AAGTC
                    C - G
                    C - G
                    A - T
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTAGTGGCTCAGCCGGTAGAGCGCCACCTTGGTAAGGTGGAAGTCGGGGGTTCGAAT
CCCCCCTAAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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