The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0900
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 554355
End posion on genome 554273
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
taaatcatat
tRNA gene sequence 
GCAAGGGTGCCCGAGCGGCCAAAGGGGGAGGACTTAAGATCCTCTGGTATAGGCCTTCGA
GGGTTCGAATCCCTTCCCTTGCActa
Downstream region at tRNA end position 
ttctttaaaa
Secondary structure (Cloverleaf model)
>At0900	Leu	TAA
                   t      Acta ttctttaaaa
                     G - C
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
      C G A        G      + | | | |     G
    G       G C C C       G A G G G     C
    G         | | |                 T T
    C       A G G G
      C A A        G     TGGTATAGGCCTTC
                    G - C
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAAGGGTGCCCGAGCGGCCAAAGGGGGAGGACTTAAGATCCTCTGGTATAGGCCTTCGA
GGGTTCGAATCCCTTCCCTTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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