The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0901
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 642474
End posion on genome 642402
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
taatagttaa
tRNA gene sequence 
GCCTATATAGTTCAGAAGGTAGAACGATTGACTCGTAATCAATAGGTCTGGGGTTCGATT
CCCCATGTGGGCTttt
Downstream region at tRNA end position 
taaaaaatca
Secondary structure (Cloverleaf model)
>At0901	Thr	CGT
                   a      Tttt taaaaaatca
                     G - C
                     C - G
                     C - G
                     T + G
                     A - T
                     T + G
                     A - T          T T
                    T     A C C C C     A
      A G A        A      | | | | |     G
    A       C T T G       T G G G G     C
    G       | | | |                 T T
    G       G A A C
      T A          G     AGGTC
                    A - T
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTATATAGTTCAGAAGGTAGAACGATTGACTCGTAATCAATAGGTCTGGGGTTCGATT
CCCCATGTGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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