The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0902
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 753185
End posion on genome 753102
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tttatgtatt
tRNA gene sequence 
GTCGGGATGGCCCAGCCTGGTACGGCGTCGGACTGCTAATCCGATGATCTTATGATCACA
CGGGTTCAAATCCCGTTCCCGGCGttt
Downstream region at tRNA end position 
tttaatttat
Secondary structure (Cloverleaf model)
>At0902	Ser	GCT
                   t      Gttt tttaatttat
                     G - C
                     T + G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     T G C C C     A
      C G A        G      | | | | |     A
    C       C C C G       A C G G G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TGATCTTATGATCAC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGGGATGGCCCAGCCTGGTACGGCGTCGGACTGCTAATCCGATGATCTTATGATCACA
CGGGTTCAAATCCCGTTCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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