The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0903
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 801303
End posion on genome 801231
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position
cggtccatat
tRNA gene sequence
GCCATGGTAGTTCAGTTGGGAGAACGCCAGACTGAAGATCTGGATGTCGCTGGTTCAAGT
CCGGCCCATGGCAtta
Downstream region at tRNA end position
actactttta
Secondary structure (Cloverleaf model)
>At0903	Phe	GAA
                   t      Atta actactttta
                     G - C
                     C - G
                     C - G
                     A - T
                     T - A
                     G - C
                     G - C          T G
                    T     C G G C C     A
      T G A        A      | | + | |     A
    T       C T T G       G C T G G     C
    G       | | | |                 T T
    G       G A A C
      G A          G     ATGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCATGGTAGTTCAGTTGGGAGAACGCCAGACTGAAGATCTGGATGTCGCTGGTTCAAGT
CCGGCCCATGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK