The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0904
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 801378
End posion on genome 801307
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
atgttgcata
tRNA gene sequence 
GGACCGGTGGTCTAGGGGTATGATTCCTCCTTGACATGGAGGAGATCACGAGTTCGAATC
TCGTTCGGTCCAtat
Downstream region at tRNA end position 
gccatggtag
Secondary structure (Cloverleaf model)
>At0904	Val	GAC
                   a      Atat gccatggtag
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G + T          T A
                    T     T G C T C     A
        G A        G      | | | | |     G
      G     T C T G       A C G A G     C
      G       | | +                 T T
      G     T G A T
        T A        T     AGATC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCGGTGGTCTAGGGGTATGATTCCTCCTTGACATGGAGGAGATCACGAGTTCGAATC
TCGTTCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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