The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0909
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 878691
End posion on genome 878617
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
ctgtattagt
tRNA gene sequence
GGGACCGTAGGGTAGCTTGGTCGATCCTTTGGGCTTTGGGAGCCTGAGACTCCGGTTCAA
ATCCGGGCGGTCCCAttt
Downstream region at tRNA end position
ttatgtcccg
Secondary structure (Cloverleaf model)
>At0909	Pro	TGG
                   t      Attt ttatgtcccg
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G G G C C     A
    T C G A        A      + | | | |     A
  T         T G G G       T C C G G     C
  G           | | +                 T T
  G         T C C T
    T C G A        T     AGAC
                    T + G
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTAGGGTAGCTTGGTCGATCCTTTGGGCTTTGGGAGCCTGAGACTCCGGTTCAA
ATCCGGGCGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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