The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0910
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 878901
End posion on genome 878828
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atttcatcct
tRNA gene sequence 
GCCTCGATAGCTCAGTCTGGTGGAGCGCGAGACTTGTAATCTCGTGGTCGCGGGTTCAAT
TCCCGTTCGGGGCTttc
Downstream region at tRNA end position 
tattttgtgt
Secondary structure (Cloverleaf model)
>At0910	Thr	TGT
                   t      Tttc tattttgtgt
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     A - T          T T
                    T     T G C C C     A
      T G A        A      + | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     TGGTC
                    C - G
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGATAGCTCAGTCTGGTGGAGCGCGAGACTTGTAATCTCGTGGTCGCGGGTTCAAT
TCCCGTTCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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