The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0911
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1050247
End posion on genome 1050099
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
catatctgtt
tRNA gene sequence
GGGGTTATAGTGTAACCTGGCATCATCTGGGACTCCAGATCCCAGGATCGGGGTTCAAAT
CCCTGTGACCCCAttt
Downstream region at tRNA end position
ttataaaaaa
Secondary structure (Cloverleaf model)
>At0911	Trp	CCA
                   t      Attt ttataaaaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     A - T          T A
                    T     G T C C C     A
      C A A        A      | + | | |     A
    C       T G T G       C G G G G     C
    T         | | +                 T T
    G       T C A T
      G C A        C     GGAT
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTTATAGTGTAACCTGGCATCATCTGGGACTCCAGttgtctttgaagaaaatatacg
cgtaactgagcagtatccgttgtgatgatcaattggagtactgaggcaagagacATCCCA
GGATCGGGGTTCAAATCCCTGTGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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