The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0913
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1050938
End posion on genome 1050856
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position
ttttgtataa
tRNA gene sequence
GCGGGGGTGCCCGAGAGGCCAAAGGGGACAGGCTTAGGACCTGTTGACGCAGGTCTACCA
GGGTTCAAATCCCTGCTCCCGCAttc
Downstream region at tRNA end position
taacaatttt
Secondary structure (Cloverleaf model)
>At0913	Leu	TAG
                   a      Attc taacaatttt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     G T C C C     A
      A G A        G      | | | | |     A
    G       G C C C       C A G G G     C
    G         | | |                 T T
    C       A G G G
      C A A        G     TGACGCAGGTCTAC
                    A - T
                    C - G
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGAGGCCAAAGGGGACAGGCTTAGGACCTGTTGACGCAGGTCTACCA
GGGTTCAAATCCCTGCTCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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