The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0919
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1378093
End posion on genome 1378020
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
atactatttt
tRNA gene sequence 
GGGCCTGTAGTCTAGCCAGGAATGACGCAGGACTTCGGATCCTGAGGTCGGGGGTTCAAA
TCCCCCTAGGTCCGtac
Downstream region at tRNA end position 
tttttttaaa
Secondary structure (Cloverleaf model)
>At0919	Arg	TCG
                   t      Gtac tttttttaaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     T - A
                     G + T          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       T C T G       G G G G G     C
    A         | | |                 T T
    G       T G A C
      G A A        G     AGGTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTGTAGTCTAGCCAGGAATGACGCAGGACTTCGGATCCTGAGGTCGGGGGTTCAAA
TCCCCCTAGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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