The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0922
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 186978
End posion on genome 187066
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
acgtttcaga
tRNA gene sequence 
GCGGAGGTAGCCTAGCCCGGCCAAGGCGTGGGACTGGAGATCCCATGGGGCTTTGCCCCG
CGGGGGTTCAAATCCCCCCCTCCGCGCCA
Downstream region at tRNA end position 
cttcttttta
Secondary structure (Cloverleaf model)
>At0922	Ser	GGA
                   a      GCCA cttcttttta
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     A
  C         T C C G       G G G G G     C
  G         | | | |                 T T
  G         A G G C
    C C A          G     TGGGGCTTTGCCCCGC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTAGCCTAGCCCGGCCAAGGCGTGGGACTGGAGATCCCATGGGGCTTTGCCCCG
CGGGGGTTCAAATCCCCCCCTCCGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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