The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0924
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 215210
End posion on genome 215297
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
cgcttgcggt
tRNA gene sequence 
GCAGGGGTCGCCAAGCCTGGCCAAAGGCGCCGGACTTAAGATCCGGTCCCGTAGGGGTTC
GGGGGTTCAAATCCCCTCCCCTGCACCA
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>At0924	Leu	TAA
                   t      ACCA tttttatttt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T C C C C     A
    C C G A        C      + | | | |     A
  T         A C C G       G G G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCCCGTAGGGGTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTCGCCAAGCCTGGCCAAAGGCGCCGGACTTAAGATCCGGTCCCGTAGGGGTTC
GGGGGTTCAAATCCCCTCCCCTGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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