The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0925
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 303992
End posion on genome 304081
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cctattttga
tRNA gene sequence 
GCAGGGGTAGCCAAGCCAGGACTACGGCGCTGGACTTGAGATCCAGTGGGGCTTTGCCCC
GCCTGGGTTCAAATCCCAGCCCCTGCGCCA
Downstream region at tRNA end position 
atgatttaac
Secondary structure (Cloverleaf model)
>At0925	Ser	TGA
                   a      GCCA atgatttaac
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G A C C C     A
    C C G A        A      | | | | |     A
  A         A C C G       C T G G G     C
  G           | | |                 T T
  G         C G G C
    A C T A        G     TGGGGCTTTGCCCCGC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTAGCCAAGCCAGGACTACGGCGCTGGACTTGAGATCCAGTGGGGCTTTGCCCC
GCCTGGGTTCAAATCCCAGCCCCTGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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