The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0927
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 358869
End posion on genome 358943
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ttatccgatt
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGCCAATCATGCGGGCCTTTCGAGCCCGCGACCCGGGTTCAA
ATCCCGGCCGGAGCAtca
Downstream region at tRNA end position 
ttatatcata
Secondary structure (Cloverleaf model)
>At0927	Glu	TTC
                   t      Atca ttatatcata
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAATCATGCGGGCCTTTCGAGCCCGCGACCCGGGTTCAA
ATCCCGGCCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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