The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0929
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 637667
End posion on genome 637742
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
ccattgatgt
tRNA gene sequence 
GCCCCCATAGCTCAGATGGTAGAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAGT
CCTGCTGGGGGCGCCA
Downstream region at tRNA end position 
ttaatttttt
Secondary structure (Cloverleaf model)
>At0929	Asn	GTT
                   t      GCCA ttaatttttt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     C G T C C     A
      A G A        A      | | | | |     G
    T       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCCATAGCTCAGATGGTAGAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAGT
CCTGCTGGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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