The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0931
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 637868
End posion on genome 637942
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tcactaatta
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGCCAATCATGCGGGCCTTTCGAGCCCGCGACCCGGGTTCAA
ATCCCGGCCGGAGCAtca
Downstream region at tRNA end position 
ttcgtcctat
Secondary structure (Cloverleaf model)
>At0931	Glu	TTC
                   a      Atca ttcgtcctat
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAATCATGCGGGCCTTTCGAGCCCGCGACCCGGGTTCAA
ATCCCGGCCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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