The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0932
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 637982
End posion on genome 638069
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
atatatatgt
tRNA gene sequence 
GCAGGGGTCGCCAAGCCTGGCCAAAGGCGCTGGGCCTAGGACCCAGTCCCGTAGGGGTTC
CAGGGTTCAAATCCCTGCCCCTGCACCA
Downstream region at tRNA end position 
taggtaaagt
Secondary structure (Cloverleaf model)
>At0932	Leu	TAG
                   t      ACCA taggtaaagt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
    C C G A        C      | | | | |     A
  T         A C C G       C A G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCCCGTAGGGGTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  C       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTCGCCAAGCCTGGCCAAAGGCGCTGGGCCTAGGACCCAGTCCCGTAGGGGTTC
CAGGGTTCAAATCCCTGCCCCTGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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