The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0936
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 862590
End posion on genome 862661
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
agcttattaa
tRNA gene sequence 
GCCCTGGTGGTGTAGAGGATATCACGGGGGACTTCGGATCCCCAAACCCGGGTTCAAATC
CCGGCCAGGGCCtca
Downstream region at tRNA end position 
tttaatttat
Secondary structure (Cloverleaf model)
>At0936	Arg	TCG
                   a      Ctca tttaatttat
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
      A G A        G      | | | | |     A
    G       T G T G       C C G G G     C
    G         | | |                 T T
    A       T C A C
      T A          G     AAAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCTGGTGGTGTAGAGGATATCACGGGGGACTTCGGATCCCCAAACCCGGGTTCAAATC
CCGGCCAGGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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