The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0940
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 863816
End posion on genome 863889
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
gggctgaaga
tRNA gene sequence 
GGGCCCGTAGCTCAGTCTGGCAGAGCGCCTGGCTTTTAACCAGGTGGTCGAGGGTTCAAA
TCCCTTCGGGCCCGcta
Downstream region at tRNA end position 
tttcctttgg
Secondary structure (Cloverleaf model)
>At0940	Lys	TTT
                   a      Gcta tttcctttgg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T T C C C     A
      T G A        A      + | | | |     A
    C       C T C G       G A G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCTGGCAGAGCGCCTGGCTTTTAACCAGGTGGTCGAGGGTTCAAA
TCCCTTCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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