The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0946
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 1313165
End posion on genome 1313249
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tgcttttatt
tRNA gene sequence 
GCGGGGGTGGCCCAGCCTGGTACGGCGTGGGACTGCTAATCCCATTGGGCAACGCCCAGC
CCGGGTTCAAGTCCCGGCCCCCGCGtca
Downstream region at tRNA end position 
tctattttag
Secondary structure (Cloverleaf model)
>At0946	Ser	GCT
                   t      Gtca tctattttag
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       C C C G       C C G G G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TTGGGCAACGCCCAGC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGGCCCAGCCTGGTACGGCGTGGGACTGCTAATCCCATTGGGCAACGCCCAGC
CCGGGTTCAAGTCCCGGCCCCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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