The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0948
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 138419
End posion on genome 138344
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
cttattagat
tRNA gene sequence 
GGGCTCGTGGTCTAGTGGCTATGACGCCGCCCTCACAAGGCGGTGGTCGCGGGTTCGAAT
CCCGCCGAGCCCACCA
Downstream region at tRNA end position 
ataattttag
Secondary structure (Cloverleaf model)
>At0948	Val	CAC
                   t      ACCA ataattttag
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     G
    G       T C T G       G C G G G     C
    G         | | |                 T T
    C       T G A C
      T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGTGGCTATGACGCCGCCCTCACAAGGCGGTGGTCGCGGGTTCGAAT
CCCGCCGAGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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