The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0950
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 227780
End posion on genome 227704
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
attgttttgt
tRNA gene sequence 
GGGCTGGTAGCTCAGACTGGGAGAGCGCCGCATTGGCTGTGCGGAGGCCGCGGGTTCAAA
TCCCGCCCAGTCCACCA
Downstream region at tRNA end position 
ttttttgatt
Secondary structure (Cloverleaf model)
>At0950	Ala	GGC
                   t      ACCA ttttttgatt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     C G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  T       G
                  T       T
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGGTAGCTCAGACTGGGAGAGCGCCGCATTGGCTGTGCGGAGGCCGCGGGTTCAAA
TCCCGCCCAGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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