The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0954
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 763842
End posion on genome 763766
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position
atgctaaggt
tRNA gene sequence
GCCTCGGTAGCTCAGCCTGGCGGAGCGCCTGCTTGGTAAGCAGGAGGTCGCGGGTTCAAA
CCCCGCCCGAGGCTCCA
Downstream region at tRNA end position
tttgaaactt
Secondary structure (Cloverleaf model)
>At0954	Thr	GGT
                   t      TCCA tttgaaactt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          C A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C G        G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTAGCTCAGCCTGGCGGAGCGCCTGCTTGGTAAGCAGGAGGTCGCGGGTTCAAA
CCCCGCCCGAGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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