The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0956
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 1038620
End posion on genome 1038544
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
gtaatataga
tRNA gene sequence 
GCCCGGGTCGCCTAGCCAGGATAGGGCGCTGGCCTGCGGAGCCAGTTTTTTCAGGGGTTC
AAATCCCCTCCCGGGCGtta
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>At0956	Arg	GCG
                   a      Gtta tttttatttt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     T C C C C     A
    C C G A        C      | | | | |     A
  A         T C C G       A G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     TTTTTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTCGCCTAGCCAGGATAGGGCGCTGGCCTGCGGAGCCAGTTTTTTCAGGGGTTC
AAATCCCCTCCCGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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