The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0957
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 16400
End posion on genome 16482
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tggcattttt
tRNA gene sequence 
GCCGAGGTAGTCTAGTGGTAGGGCGCAAGCCTGGAAAGCTTGTGGGGCTTGACCCCTCGG
GAGTTCGAATCTCCCCCTCGGCGtat
Downstream region at tRNA end position 
aattcttttt
Secondary structure (Cloverleaf model)
>At0957	Ser	GGA
                   t      Gtat aattcttttt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
        G A        A      | | | | |     G
      T     T C T G       G G G A G     C
      G     + | + |                 T T
      G     G G G C
        T A        G     TGGGGCTTGACCCCTC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTAGTCTAGTGGTAGGGCGCAAGCCTGGAAAGCTTGTGGGGCTTGACCCCTCGG
GAGTTCGAATCTCCCCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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