The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0958
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 27289
End posion on genome 27376
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
gtattcccgt
tRNA gene sequence 
GCGGGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTCTCGTAGGAGTTC
GTGTGTTCGAATCACACCTCCCGCACCA
Downstream region at tRNA end position 
aacatactac
Secondary structure (Cloverleaf model)
>At0958	Leu	GAG
                   t      ACCA aacatactac
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     C A C A C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G T G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGTAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTCTCGTAGGAGTTC
GTGTGTTCGAATCACACCTCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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