The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0960
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 38091
End posion on genome 38168
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
ggttgttcga
tRNA gene sequence 
GGGCGTGTGGCCTAGCCAGGATATGGCGGCAGCCTCCTAAGCTGTAAATCAGGGGTTCAA
ATCCCTTCACGCCCGCCA
Downstream region at tRNA end position 
ttattcttct
Secondary structure (Cloverleaf model)
>At0960	Arg	CCT
                   a      GCCA ttattcttct
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A
                     G - C          T A
                    T     T T C C C     A
    C C G A        G      | + | | |     A
  A         T C C G       A G G G G     C
  G           | | |                 T T
  G         T G G C
    A T A          G     AAATC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGTGTGGCCTAGCCAGGATATGGCGGCAGCCTCCTAAGCTGTAAATCAGGGGTTCAA
ATCCCTTCACGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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