The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0961
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 225083
End posion on genome 225168
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
tttctcaaat
tRNA gene sequence 
GCGGGAGTAACCAAGTGGCCAACGGTGGCAGACTCAAGATCTGCTCGTGTAGACGTTCGG
GGGTTCGAATCCCTTCTCCCGCACCA
Downstream region at tRNA end position 
ttttaattat
Secondary structure (Cloverleaf model)
>At0961	Leu	CAA
                   t      ACCA ttttaattat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     T T C C C     A
      T G A        A      + + | | |     G
    G       A C C A       G G G G G     C
    G         | | |                 T T
    C       C G G T
      C A A        G     TCGTGTAGACGTTC
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGAGTAACCAAGTGGCCAACGGTGGCAGACTCAAGATCTGCTCGTGTAGACGTTCGG
GGGTTCGAATCCCTTCTCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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