The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0962
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 288576
End posion on genome 288661
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position
ccattcattt
tRNA gene sequence
GCTGAGGTAGCCAAGTGGACTACGGCGCCGGTCTTGAAAACCGGTAGTGCTAACGCGCTG
CAAGAGTTCGAATCTCTTCCTCAGCGtaa
Downstream region at tRNA end position
aatcagcagt
Secondary structure (Cloverleaf model)
>At0962	Ser	TGA
                   t      Gtaa aatcagcagt
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T T C T C     A
      T G A        A      | | | | |     G
    G       A C C G       A A G A G     C
    G         | | |                 T T
    A       C G G C
      C T A        G     TAGTGCTAACGCGCTGC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGCCAAGTGGACTACGGCGCCGGTCTTGAAAACCGGTAGTGCTAACGCGCTG
CAAGAGTTCGAATCTCTTCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK