The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0963
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 436719
End posion on genome 436814
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
ttttgaaaga
tRNA gene sequence 
GGGCTCGTAGGGTAGCCAGGACATCCTCATGGGCTTCGAACCCATTGACCCGCGTTCGAA
TCGCGGCGGGCCCGtat
Downstream region at tRNA end position 
cttttatcgt
Secondary structure (Cloverleaf model)
>At0963	Arg	TCG
                   a      Gtat cttttatcgt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        A      | | | | |     G
  A         T G G G       C C G C G     C
  G           | | +                 T T
  G         T C C T
    A C A          C     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGGGTAGCCAGGACATCCTCATGGGCTTCGAtgtagtaatatgctgcgaaga
cACCCATTGACCCGCGTTCGAATCGCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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