The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0964
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 552565
End posion on genome 552640
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aatcataagc
tRNA gene sequence 
AGCCCGGTAGTGTAGTGGTCAATCATGCAGGACTCTGGATCCCGCAACCTCGGTTCGAAT
CCGTGCCGGGCTACCA
Downstream region at tRNA end position 
aatttatttt
Secondary structure (Cloverleaf model)
>At0964	Gln	CTG
                   c      ACCA aatttatttt
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G T G C C     A
      T G A        A      |   | | |     G
    G       T G T G       C T C G G     C
    G         | | +                 T T
    T       T C A T
      C A A        G     CAAC
                    C - G
                    A   C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTAGTGTAGTGGTCAATCATGCAGGACTCTGGATCCCGCAACCTCGGTTCGAAT
CCGTGCCGGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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