The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0965
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1140321
End posion on genome 1140408
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
atatcgcgga
tRNA gene sequence 
GCGAGAGTTGCCCAGCCTGGCCAAAGGCGCTAGGTTCAGAGCCTAGTCTCGTAGGAGTTC
GAGGGTTCGAATCCCTTCTCTCGCACCA
Downstream region at tRNA end position 
agactatttt
Secondary structure (Cloverleaf model)
>At0965	Leu	CAG
                   a      ACCA agactatttt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      + | | | |     G
  T         C C C G       G A G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCTCGTAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       A
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGAGTTGCCCAGCCTGGCCAAAGGCGCTAGGTTCAGAGCCTAGTCTCGTAGGAGTTC
GAGGGTTCGAATCCCTTCTCTCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK