The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0967
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1488301
End posion on genome 1488418
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position
acagaacagt
tRNA gene sequence
GCCGAGGTGGCAGAGCGGACTAACGCGGCAGGCTCGAGACCTGTTTCTCCTAACGGAGTG
CTTGGGTTCGAATCCCAACCTCGGCGttc
Downstream region at tRNA end position
tattttatgt
Secondary structure (Cloverleaf model)
>At0967	Ser	CGA
                   t      Gttc tattttatgt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     A A C C C     A
      C G A        G      | | | | |     G
    G       G A C G       T T G G G     C
    G           | |                 T T
    A       A C G C
      C T A        G     TTCTCCTAACGGAGTGC
                    G + T
                    C - G
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTGGCAGAGCGGACTAatccaacggtgtatttatgccgcggagtctaaACGCGG
CAGGCTCGAGACCTGTTTCTCCTAACGGAGTGCTTGGGTTCGAATCCCAACCTCGGCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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