The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0968
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1499488
End posion on genome 1499564
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ttcacacgat
tRNA gene sequence 
GGGATAGTAGGGTAGCCTGGTCATCCTCGAGCGTTTGGGACGCTTGGACTGCGGTTCAAA
TCCGCGCTATCCCACCA
Downstream region at tRNA end position 
gaatctttta
Secondary structure (Cloverleaf model)
>At0968	Pro	TGG
                   t      ACCA gaatctttta
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C          T A
                    T     G C G C C     A
    C C G A        A      + | | | |     A
  T         T G G G       T G C G G     C
  G           | | +                 T T
  G         T C C T
    T C A          C     GGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGATAGTAGGGTAGCCTGGTCATCCTCGAGCGTTTGGGACGCTTGGACTGCGGTTCAAA
TCCGCGCTATCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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