The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0969
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1519957
End posion on genome 1520027
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
agtacagtgt
tRNA gene sequence 
GCGACTGTGGTTTAGTGGTATGACCTGAGCTTCCCAAGCTTAGAACCCGGGTTCGAATCC
CGGCAGCCGCAttt
Downstream region at tRNA end position 
tagtaagaga
Secondary structure (Cloverleaf model)
>At0969	Gly	CCC
                   t      Attt tagtaagaga
                     G - C
                     C - G
                     G - C
                     A   C
                     C - G
                     T - A
                     G - C          T A
                    T     G G C C C     A
        G A        G      | | | | |     G
      T     T T T G       C C G G G     C
      G       + | |                 T T
      G     T G A C
        T A        C     GAAC
                    T - A
                    G + T
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGACTGTGGTTTAGTGGTATGACCTGAGCTTCCCAAGCTTAGAACCCGGGTTCGAATCC
CGGCAGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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