The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0970
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1631638
End posion on genome 1631712
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position
taacaatttt
tRNA gene sequence
GGGCCCGTGGCTTAGCCAGGATATAGCACCGGGCTTCTAACCCGGGGGTCGTGGGTTCAA
CTCCCACCGGGTCCGtta
Downstream region at tRNA end position
gaactctttt
Secondary structure (Cloverleaf model)
>At0970	Arg	TCT
                   t      Gtta gaactctttt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T C
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         T T C G       G T G G G     C
  G           | | |                 T T
  G         T A G C
    A T A          A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTTAGCCAGGATATAGCACCGGGCTTCTAACCCGGGGGTCGTGGGTTCAA
CTCCCACCGGGTCCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK