The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0970
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1631638
End posion on genome 1631712
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
taacaatttt
tRNA gene sequence 
GGGCCCGTGGCTTAGCCAGGATATAGCACCGGGCTTCTAACCCGGGGGTCGTGGGTTCAA
CTCCCACCGGGTCCGtta
Downstream region at tRNA end position 
gaactctttt
Secondary structure (Cloverleaf model)
>At0970	Arg	TCT
                   t      Gtta gaactctttt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T C
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         T T C G       G T G G G     C
  G           | | |                 T T
  G         T A G C
    A T A          A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTTAGCCAGGATATAGCACCGGGCTTCTAACCCGGGGGTCGTGGGTTCAA
CTCCCACCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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