The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0973
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2057476
End posion on genome 2057547
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ctgtctaact
tRNA gene sequence 
GTCCTGGTAGGGTAGAGGATATCCTTGGGGCTTGCGGAGCCTTAGACCCGAGTTCGATTC
TCGGTCGGGACGtac
Downstream region at tRNA end position 
aatatttagt
Secondary structure (Cloverleaf model)
>At0973	Arg	GCG
                   t      Gtac aatatttagt
                     G - C
                     T - A
                     C - G
                     C - G
                     T + G
                     G - C
                     G + T          T T
                    T     G G C T C     A
      A G A        A      | | | | |     G
    G       T G G G       C C G A G     C
    G         | | +                 T T
    A       T C C T
      T A          T     AGAC
                    G + T
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCTGGTAGGGTAGAGGATATCCTTGGGGCTTGCGGAGCCTTAGACCCGAGTTCGATTC
TCGGTCGGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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