The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0974
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2212067
End posion on genome 2212141
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cctatttcgt
tRNA gene sequence 
GCCGGGGTAGGGTAGCGGTTATCCTGTAGCCCTGTGGAGGCTACGATTCGAGTTCGACTC
TCGGTCCCGGCCCCA
Downstream region at tRNA end position 
ttcttattct
Secondary structure (Cloverleaf model)
>At0974	His	GTG
                   t      CCCA ttcttattct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T C
                    T     G G C T C     A
      C G A        A      + | | | |     G
    G       T G G G       T C G A G     C
    G         | | +                 T T
    T       T C C T
      T A          G     CGAT
                    T - A
                    A - T
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGGGTAGCGGTTATCCTGTAGCCCTGTGGAGGCTACGATTCGAGTTCGACTC
TCGGTCCCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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