The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0976
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2325500
End posion on genome 2325573
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
tttcaatagc
tRNA gene sequence 
GCCTCGGTGGCTCAGCCCGGCAGAGCGAGTGATTTGTAATCACTAGGTCGCGTGTTCAAA
TCACGCCCGAGGCTttc
Downstream region at tRNA end position 
tactaacagt
Secondary structure (Cloverleaf model)
>At0976	Thr	TGT
                   c      Tttc tactaacagt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     C G C A C     A
      C G A        G      | | | | |     A
    C       C T C G       G C G T G     C
    C       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    A - T
                    G - C
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGCTCAGCCCGGCAGAGCGAGTGATTTGTAATCACTAGGTCGCGTGTTCAAA
TCACGCCCGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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