The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0977
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2383540
End posion on genome 2383613
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gatacgcatt
tRNA gene sequence 
GGGCCCGTAGCTTAGCTAGGTGGAGCGCACGGCTGATAACCGTGAGGCCATGAGTTCGAA
TCTCATCGGGCCCActa
Downstream region at tRNA end position 
ttcttgttct
Secondary structure (Cloverleaf model)
>At0977	Ile	GAT
                   t      Acta ttcttgttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C T C     A
      C G A        A      | | | | |     G
    T       T T C G       A T G A G     C
    A       + | | |                 T T
    G       G A G C
      G T G        G     AGGCC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCTAGGTGGAGCGCACGGCTGATAACCGTGAGGCCATGAGTTCGAA
TCTCATCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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