The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0978
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2432779
End posion on genome 2432850
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gggtgcaagt
tRNA gene sequence 
GCGCTGATGGTCTAGTGGCTATGACTGGGGCCTTCCAAGCCCTAAACCCGGGTTCAAATC
CCGGTTGGCGCAtct
Downstream region at tRNA end position 
tattcttttc
Secondary structure (Cloverleaf model)
>At0978	Gly	TCC
                   t      Atct tattcttttc
                     G - C
                     C - G
                     G - C
                     C - G
                     T + G
                     G + T
                     A - T          T A
                    T     G G C C C     A
      T G A        G      | | | | |     A
    G       T C T G       C C G G G     C
    G         | | |                 T T
    C       T G A C
      T A          T     AAAC
                    G + T
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCTGATGGTCTAGTGGCTATGACTGGGGCCTTCCAAGCCCTAAACCCGGGTTCAAATC
CCGGTTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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