The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0979
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2437020
End posion on genome 2437107
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
atctctcagt
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGATGGGCTTAGGACCCATTTTCGTAGGAATTC
GTGTGTTCGAATCACACCTCTCGCACCA
Downstream region at tRNA end position 
tcttttttat
Secondary structure (Cloverleaf model)
>At0979	Leu	TAG
                   t      ACCA tcttttttat
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G + T
                     G - C          T A
                    T     C A C A C     A
    C C G A        T      | | | | |     G
  A         C C C G       G T G T G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTTCGTAGGAATTC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGATGGGCTTAGGACCCATTTTCGTAGGAATTC
GTGTGTTCGAATCACACCTCTCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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