The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0980
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 2480194
End posion on genome 2480266
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
aagttctcag
tRNA gene sequence 
GGGCTTGTAGATCAGTTGGAAGATCGCCGCCTTTGCAAGGCGGAGGCCTAGGGTTCGAAT
CCCTACAAGTCCAttg
Downstream region at tRNA end position 
gatcaattaa
Secondary structure (Cloverleaf model)
>At0980	Ala	TGC
                   g      Attg gatcaattaa
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     A T C C C     A
      T G A        A      | | | | |     G
    T       C T A G       T A G G G     C
    G       | | | |                 T T
    G       G A T C
      A A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTAGATCAGTTGGAAGATCGCCGCCTTTGCAAGGCGGAGGCCTAGGGTTCGAAT
CCCTACAAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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